Hopefully, as Rwallingus added seasons to his collection, he learned that the open loop started in Skeleton Crew (last episode of season 1) was finally closed in episode 56: Death Watch.
The reason that he did not see part 2 of Skeleton Crew as the opener of season #2 is that Season #1 was bought by NBC and canceled by NBC after the part 2 had been filmed but not shown. When CBS picked up JAG, they began with new plot lines since they couldn't touch un-shown episodes.
The NBC/CBS split also accounts for some plot inconsistencies. The writers felt that they had to deal with her one-minute roll as Lt. Schonke but didn't feel the need to explain how Harm was no longer arrested or even a suspect.
The reason that he did not see part 2 of Skeleton Crew as the opener of season #2 is that Season #1 was bought by NBC and canceled by NBC after the part 2 had been filmed but not shown. When CBS picked up JAG, they began with new plot lines since they couldn't touch un-shown episodes.
The NBC/CBS split also accounts for some plot inconsistencies. The writers felt that they had to deal with her one-minute roll as Lt. Schonke but didn't feel the need to explain how Harm was no longer arrested or even a suspect.