When they are watching the video of Agent Bannister's death, MacGyver's arms vary position between shots. In the long shots they are by his sides but in the close-ups they are folded in front of him.
On the getaway car in Ankara, the Turkish registration plate reads 6Y LD 30T9. This is not a valid Turkish plate, which should start with 06 (for Ankara) and should only have digits in the third block.