It should be questioned why Donald outfitted his spaceship with weaponry if it was only meant to be used for establishing and visiting a distant space colony.
The second hole in the dome destabilizes the entire dome structure while the first hole (in Part One) does not.
Chase says that Donald put a Block on the Lab Rats' Chips to prevent the Triton App from coming to them, but Douglas when he was still evil did decrypt the block when capturing them, later on re-enabling it to be activated remotely.
Leo when Dr. Gao puts the Triton App onto him after Bree briefly knocks him down does not have the Green Glowing Eyes to indicate it. A Similar Goof happened in Part 2 of "Rise of the Secret Soldiers" with the Bionic Soldiers when they were under Krane's Control (See the Goofs for that Episode), which also had them still able to speak whilst under his control.
Despite Bree throwing off Krane's Chin Strap to help him breath, leaving him to stroke again before they escaped, he still has it with him in Good Condition when chasing after Donald's Space Craft back to Earth in one of the Facility's Space Craft.