In one scene Booth is wearing a shoulder holster and in the very next scene he is wearing a cross-draw belt holster.
Brennan moves her hands from her hips and folds her arms while talking with Mrs. Masruk. But her reflection behind Mrs. Masruk (reverse angle) shows her hands still on her hips.
During the extended conversation between Booth and Brennan in the car, the shoulder strap of the seat belt on Brennan keeps shifting. Sometimes it is down off her shoulder; other times it is snug against her neck.
In many of the early episodes Agent Booth pulls a revolver as his service weapon. The FBI does not allow revolvers as the main service weapon. They usually issue a Glock or a Sig/Sauer semi-automatic.
Dr Brennan says that the skin is too "decimated" to get fingerprints.
Since decimating means to kill (or lose) 1 in 10, it is not possible to decimate skin.
At the beginning when Bones and Angela arrive at the crime scene, Booth introduces them to DHS Agent Gibson even though this was their 2nd meeting. Agent Gibson was the agent that detained Bones at the airport at the start of the pilot. Booth introduces them in this episode with "You remember Agent Gibson, Homeland Security? Dr. Temperance Brennan and Angela Montenegro."
When Booth and Brennan are in Booth's SUV on their way to talk to Farid Masruk, the traffic loop changes in the rear view window.
In the beginning of the episode, Hamid opens his phone. It says connected to Sahar, but the phone is still ringing.
When Booth and Bones are going up the escalator, Booth mouth does not match up with what we hear him say.