When Brennan and Hodgins are talking about who is missing out on what this Christmas, Hodgins says Goodman is missing his family and Zack doesn't get to see his kids. He switched characters. Zack is missing out on seeing his family and Goodman is missing his kids.
When Booth leaves the lab, he is carrying his coat and nothing else. Later on, at Wong Foo's, he gives the robot that Zack made to Parker.
When Dr. Brennan is looking at her microscope, Booth approaches her and takes one of the photographs next to the microscope and turns it face down. After the close-up shot of Brennan, the photo is shown face up.
Booth, Brennan, and Dr. Goodman are sitting on the catwalk discussing a case. Angela comes on scene and talks to them from downstairs. This prompts Brennan to get up and leave. Yet when the frame goes back to Angela looking at Booth and Dr. Goodman, you can still see Brennan sitting to the right.
When Angela is asking for Brennan's help to celebrate Christmas while quarantined, the straps on Brennan's top and bra change positions between the long overhead shots and the close-up shots.
While Valley Fever is transmitted by spores, it is not contagious and does not get spread by people breathing. There was no reason for the quarantine.
After being exposed to the (at the time unknown) pathogen, Hodgins and Zack rush to a hazmat shower. While they may have been exposed, no one else had been till they left the closed lab and breathed the same air. Both should have known not to expose anyone else.
When Booth was injected with the antifungal drug (stated to be amphotericin B), the medicine didn't have enough time to be dispersed into his blood stream - he wouldn't have been affected by the medicine that quickly. The injectable portion (amphotericin B) of the regimen would be given by slow intravenous infusion, not by intramuscular injection into the gluteal musculature as portrayed.
The coin list that is given to bones has coins listed for years that they were not even minted for or even existed.
For example:
They have a washington quarter listed as 1923D.
The washington quarter was not first minted until 1932.
They have franklin half dollars listed for 1923 and 1925D.
The franklin half dollar was not first minted until 1948.
They have kenndey half dollar listed as 1923.
The Kennedy half dollar was not minted until 1964.
They have Eisenhower dollar coins listed as 1923 and 1924D.
The Eisenhower dollar was not minted until 1971.
They have a silver eagle listed as 1925D.
The silver eagle was not minted until 1986.
The have a mint set Penny listed as 1926.
The first mint sets were released in 1936.
They have listed state quarters as 1926S.
The sate quarters were not released until 1999.
For example:
They have a washington quarter listed as 1923D.
The washington quarter was not first minted until 1932.
They have franklin half dollars listed for 1923 and 1925D.
The franklin half dollar was not first minted until 1948.
They have kenndey half dollar listed as 1923.
The Kennedy half dollar was not minted until 1964.
They have Eisenhower dollar coins listed as 1923 and 1924D.
The Eisenhower dollar was not minted until 1971.
They have a silver eagle listed as 1925D.
The silver eagle was not minted until 1986.
The have a mint set Penny listed as 1926.
The first mint sets were released in 1936.
They have listed state quarters as 1926S.
The sate quarters were not released until 1999.
While searching online for information we see Dr. Brennan using an AOL account. This seems quite odd as she would have to have access to the best computer programs and search engines. This takes place seven years after Google was launched in 1998.
The American Numismatic Association asserts that there are actually 40 copper planchet 1943 pennies, rather than the 12 cited by Dr. Brennan. Also, the most one such coin has ever fetched is about $82,500. $100,000 seems unlikely for the condition of the coin shown.