The plane's registration number N81GB (large red letters) changes to N476PA (small black letters) as the team is being loaded aboard.
When Murdock was taking off the gauges during the instrument panel view show the plane is not even running.
Season 5.13 opening scene is the exact same scene as season 1.9 except for a quick cut in showing Frankie Santana hauling some bags onto the plane on the landing strip.