- (2000) Book (ed.): "The Vintage Book of Amnesia: An Anthology" (Vintage Books)
- (2002) Book (co-ed.): "Da Capo Best Music Writing 2002: The Year's Finest Writing on Rock, Pop, Jazz, Country, and More" (Da Capo)
- (2004) Short story collection: "Men and Cartoons" (Doubleday)
- (2001) Wrote introduction to "The Man Who Was Thursday", by G.K. Chesterton (Modern Library)
- (2003) Wrote introduction to "Meeting Evil" by Thomas Berger (Simon and Schuster)
- (2003) Novel: "The Fortress of Solitude" (Doubleday)
- (2002) "The Dystopianist, Thinking of his Rival is Interrupted by a Knock on the Door," short story in Conjunction 39: The New Wave Fabulists (Bard College)
- (2001) Novel: "This Shape We're In" (McSweeney's Books)
- (1999) Short story collection, with Carter Scholz: "Kafka Americana" (Subterranean Press)
- (1999) Novel: "Motherless Brooklyn" (Doubleday), winner of the National Book Critics' Circle Award and the Gold Dagger Award)
- (1998) Novel: "Girl in Landscape" (Doubleday)
- (1997) Novel: "As She Climbed Across the Table" (Doubleday)
- (1996) Short story collection: "The Wall of the Sky, The Wall of the Eye" (Harcour; winner of the World Fantasy Award)
- (1995) Novel: "Amnesia Moon" (Harcourt Brace)
- (1994) Novel: "Gun, With Occasional Music" (Harcourt Brace)
- (2005) "The Disappointment Artist and Other Essays" (Doubleday). [Includes essays: Defending "The Searchers" -- The disappointment artist -- 13, 1977, 21 -- Speak, Hoyt-Schermerhorn -- Identifying with your parents, or, The return of the king -- You don't know Dick -- Lives of the Bohemians -- Two or three things I dunno about Cassavetes -- The Beards.]
- (2009) Novel: "Chronic City"
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