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- DirectorJesús Salvador TreviñoStarsEmily DeschanelDavid BoreanazMichaela ConlinWhen a young boy goes missing from a mall, Bones is called in to determine if it is his body found in a nearby field.
- DirectorSanford BookstaverStarsEmily DeschanelDavid BoreanazMichaela ConlinBones and Booth investigate a missing woman found in a fridge while Bones reconnects with her former professor.
- DirectorGreg YaitanesStarsEmily DeschanelDavid BoreanazMichaela ConlinWhile the gang is quarantined in the lab for Christmas, they search for clues to solve the mystery of a skeleton found in a fallout shelter.
- DirectorTony WharmbyStarsEmily DeschanelDavid BoreanazMichaela ConlinBones is told to investigate a plane crash involving Chinese delegates, but she is more interested in bone fragments from a person who was not on the plane. The fragments lead to a man whose father has been missing for five years.
- DirectorAllan KroekerStarsEmily DeschanelDavid BoreanazMichaela ConlinAfter Bones narrowly avoids being shot while on the way to a blind date, the shooter is thought to be connected to one of two murders she's investigating: one of mob boss James Cugini, the other a victim of serial killer Kevin Hollings.
- DirectorJames Whitmore Jr.StarsEmily DeschanelDavid BoreanazMichaela ConlinBones goes to New Orleans post-Katrina and becomes involved in Voodoo guided murder.
- DirectorJesús Salvador TreviñoStarsEmily DeschanelDavid BoreanazMichaela ConlinWhen Brennan's mother is found in the Jeffersonian's storage for unidentified remains, Booth opens an official FBI investigation to find out who killed her.
- DirectorSanford BookstaverStarsEmily DeschanelDavid BoreanazMichaela ConlinWhen a tractor-trailer collides with a garbage truck, the skeleton of a 17-year old boy is found in the trash. A facial imprint from a shroud that wrapped the body helps identify the victim as a suburban honor student.
- DirectorKate WoodsStarsEmily DeschanelDavid BoreanazMichaela ConlinA trip to Vegas to identify a body is complicated when a more recent body is found nearby.
- DirectorCraig Ross Jr.StarsEmily DeschanelDavid BoreanazMichaela ConlinWhen Hodgins and Brennan are buried alive, it's a race against time and a kidnapper who doesn't negotiate.
- DirectorTony WharmbyStarsEmily DeschanelDavid BoreanazMichaela ConlinThe headless skeleton of a young man is found in a state forest. Brennan and Booth's investigation becomes entangled in the local legend of a woman who was decapitated as a witch in the 1780s and is said to still haunt the forest.
- DirectorDavid DuchovnyStarsEmily DeschanelDavid BoreanazMichaela ConlinBooth and Bones investigate a murder that is connected to Bones' father. Meanwhile, after obtaining his doctorate, Zack gets a makeover to appear more professional.
- DirectorJesús Salvador TreviñoStarsEmily DeschanelDavid BoreanazMichaela ConlinAfter Howard Epps orchestrates an escape from his penitentiary, he starts picking off the Jeffersonian team one by one and taunting Brennan with clues to save them.
- DirectorCraig Ross Jr.StarsEmily DeschanelDavid BoreanazMichaela ConlinJust as Temperance is preparing to publicize her latest book, bodies start showing up that are eerily similar to the victims in her mystery novel.
- DirectorTony WharmbyStarsEmily DeschanelDavid BoreanazMichaela ConlinBones is called back from vacation - several times - after a boneless body is found, and Sully has a proposition.
- DirectorJeff WoolnoughStarsEmily DeschanelDavid BoreanazMichaela ConlinBooth's investigation into a presumed dead hit man turns quite dangerous, and Brennan ends up turning to an unlikely source for help.
- 2005–201742mTV-147.7 (1.1K)TV EpisodeDirectorCaleb DeschanelStarsEmily DeschanelDavid BoreanazMichaela ConlinHomeland security asks Bones to examine some remains, thinking they're radioactive, and although the site is cleared two questions remain: why was an up and coming chef murdered, and why are the bones still glowing?
- DirectorTony WharmbyStarsEmily DeschanelDavid BoreanazMichaela ConlinAs the wedding approaches, the team investigates the life/death of a little girl. Bones's father shows up, with an heirloom and a message from her mother.
- DirectorIan ToyntonStarsEmily DeschanelDavid BoreanazMichaela ConlinBones reluctantly searches for a replacement for Zack. A skull is tossed off a highway overpass and hits a vehicle. There is evidence the victim was eaten by a cannibal.
- DirectorAllan KroekerStarsEmily DeschanelDavid BoreanazMichaela ConlinA soccer mom dies as her car explodes, leading the team to discover that she was a murder suspect wanted for 30 years.
- DirectorSteven DePaulStarsEmily DeschanelDavid BoreanazMichaela ConlinA charred body leads to a philandering organic farming magnate.
- DirectorDwight H. LittleStarsEmily DeschanelDavid BoreanazMichaela ConlinThe Gormogon killer strikes again, and his next play is a little close to home. Russ returns to face a parole violation when his girlfriend's daughter takes a turn for the worse.
- DirectorJeff WoolnoughStarsEmily DeschanelDavid BoreanazMichaela ConlinBrennan and Booth investigate the death of a Santa as Bones tries to give her father the Christmas he's always dreamed of, and Booth comes to terms with not spending the holiday with Parker.
- DirectorScott LautanenStarsEmily DeschanelDavid BoreanazMichaela ConlinBooth and Brennan investigate the death of a motorcycle racer, and when another seeming accident occurs on the track attention turns to the team owners and a reporter, meanwhile Dr. Sweets manipulates them into a "social outing" with him and his girlfriend.
- DirectorIan ToyntonStarsEmily DeschanelDavid BoreanazMichaela ConlinMiraculously surviving a suspicious car accident that kills its mother, a baby is left with Booth and Bones who care for the infant while investigating the crime.
- DirectorJeannot SzwarcStarsEmily DeschanelDavid BoreanazMichaela ConlinBrennan's father Max goes on trial for the alleged murder of FBI Deputy Director Robert Kirby, requiring everyone on the Jeffersonian team but Brennan to testify for the prosecution. Brennan, the forensics advisor for the defense, desperately tries to prove her father's innocence. Meanwhile, Booth requires the assistance of therapist Dr. Lance Sweets to help with his partnership with Brennan.
- DirectorGordon LonsdaleStarsEmily DeschanelDavid BoreanazMichaela ConlinBrennan and Booth investigate the murder of an aspiring singer, and Booth attracts a groupie.
- DirectorAllan KroekerStarsEmily DeschanelDavid BoreanazMichaela ConlinHeartbreak hits the Squint Squad as they deal with the aftermath of the shooting and finally Gormogon and his Apprentice are revealed.
- DirectorSteven DePaulStarsEmily DeschanelDavid BoreanazMichaela ConlinA body is discovered in an outhouse. The victim is a host of show that exposes men's infidelities. Booth learns about Bones's dating situation.
- DirectorJeff WoolnoughStarsEmily DeschanelDavid BoreanazMichaela ConlinWhile spending some time with his son, Booth finds a human finger. They find the body of a veterinarian. Hodgins starts to realize how he's been affected by the turmoil in his life.
- DirectorAllison Liddi-BrownStarsEmily DeschanelDavid BoreanazMichaela ConlinA body flies out of an exploding meth lab. As the team tries to identify the body, Booth works on a big case which could boost his career, but he's distracted when his brother shows up and shows some interest in Bones.
- DirectorJessica LandawStarsEmily DeschanelDavid BoreanazMichaela ConlinBrennan and Booth investigate the remains of a bodyguard of two children who attend a high security school for the children of important people. Also, Cam hires Brennan's father as a teacher which causes some conflicts for Bones.
- DirectorIan ToyntonStarsEmily DeschanelDavid BoreanazMichaela ConlinThe Gravedigger returns and captures Booth. He wants the evidence that someone has stolen from the case, and he believes that Bones has it. Can the Squints find their friend before Booth becomes the Gravediggers latest casualty?
- DirectorBrad TurnerStarsEmily DeschanelDavid BoreanazMichaela ConlinThe frozen shattered remains of a scientist leads the team to a highly regarded research institute. Angela's father comes to town.
- DirectorSteven DePaulStarsEmily DeschanelDavid BoreanazMichaela ConlinThe flattened remains of a woman are found in a recycling plant, leading the team to a wedding planner, the woman's fiancee, and the owner of an online dating service. As the Squints work to solve the case, Bones and Booth are at odds when it appears that someone they know is cheating on a friend/colleague.
- DirectorJeff WoolnoughStarsEmily DeschanelDavid BoreanazMichaela ConlinSkeletal remains used by a Norwegian Black Metal Band lead the team to explore the underground music scene. Gordon-Gordon prepares to retire from psychology, but not before meeting with Sweets and helping Bones and Booth solve their current case.
- DirectorIan ToyntonStarsEmily DeschanelDavid BoreanazMichaela ConlinBones asks for Booth's advice on which of her assistants she should hire. Booth gets a call from a friend, a Japanese cop who Booth once worked with in an exchange program, who asks him to check on his sister. Unfortunately they locate her head. Now the squints must locate the body.
- DirectorKevin HooksStarsEmily DeschanelDavid BoreanazMichaela ConlinThe remains are found in a barrel of wine. Bones realizes she wants to have a child and asks Booth for help.
- DirectorIan ToyntonStarsEmily DeschanelDavid BoreanazMichaela ConlinStory of a murder in a nightclub with multiple suspects, with familiar faces in a different perspective. When the story's finished, Booth's health crisis takes an unexpected twist.
- DirectorIan ToyntonStarsEmily DeschanelDavid BoreanazMichaela ConlinBones returns from Guatemala as Booth is finally cleared for duty; Booth is anxious to prove he's fully recovered, even accepting help from Angela's psychic. Things take an interesting turn when the psychic informs them that there is a mass grave underneath a fountain.
- DirectorAlex ChappleStarsEmily DeschanelDavid BoreanazMichaela ConlinA diamond courier carrying a briefcase is killed. State Department requests discretion while investigating due to National Security concerns. Meanwhile, Wendell loses his scholarship, and Booth tries to relearn plumbing techniques.
- DirectorChad LoweStarsEmily DeschanelDavid BoreanazMichaela ConlinBooth, still suffering from his brain surgery, has to get re-certified for FBI marksmanship. Meanwhile, the team investigates the remains of a little person discovered in a sinkhole. The victim, Bryce DaFonte, also known as "The Iron Leprechaun," competed in a popular wrestling league, the popularity left him with many enemies.
- DirectorJeff WoolnoughStarsEmily DeschanelDavid BoreanazMichaela ConlinIn Howard Fileman's house, which is for sale, estate agent Katie Selnick and two prospective buyers discover a corpse, charred except for a fat foot. Clever forensics gradually show it was actually two people, a fat man and PriceCo saleswoman Meg Tracy, who recently lost half her excessive weight and met her lover in a fetishist club. Seeley however is greatly distracted by a surprise visits from Hank 'Pops' Booth, who left his retirement home after hitting a male nurse and now tries to "correct" Booth's life, but rather lost control of his own.
- DirectorTim SouthamStarsEmily DeschanelDavid BoreanazMichaela ConlinWhen a man dressed as Santa Claus blows himself up during a botched bank robbery, Brennan and Booth work to identify the bomber and determine his motives. Meanwhile, Brennan makes plans to spend Christmas in El Salvador, but her father convinces her to spend the holidays with him and Margaret Whitesell, a newly discovered distant relative.
- DirectorEmile B. LevisettiStarsEmily DeschanelDavid BoreanazMichaela ConlinMr. White and his team of government agents put the Jeffersonian Lab on lock down and demand that Brennan and her forensics team determine a cause of death for an unidentified, but highly classified set of remains. As the team gets to work, their findings lead them to suspect they are investigating one of the most famous presidential assassinations in history. Meanwhile, Booth's boss, Andrew Hacker, helps him break into the lab and determine the motive behind the mystery investigation, and a frustrated Cam worries that Michelle may be keeping a big secret from her.
- DirectorDwight H. LittleStarsEmily DeschanelDavid BoreanazMichaela ConlinWhen a human skeleton is discovered in the trenches of an old Civil War battleground, Brennan and Booth are called to the case. Despite the historical location, Brennan quickly identifies the bones as belonging to Dan Pinard, a present-day local dentist. While Booth investigates suspects, including the victim's former boyfriend, Hodgins and lab intern Vincent Nigel-Murray work doggedly to clean the bones of a stubborn clay residue which is preventing the team from determining a cause of death. Meanwhile, Booth's brother, Jared, returns from his travels with some surprising news.
- DirectorChad LoweStarsEmily DeschanelDavid BoreanazMichaela ConlinWhen a subway train is thrown off the track by 60,000 gallons of flood water, a partially skeletonized body emerges out of the overflow. While Dr. Sweets, a passenger on the derailed train, copes with post traumatic stress, the rest of the team and intern Daisy Wick get to work on identifying the victim as Martin Aragon, a professional ghost writer caught up in a deadly love triangle. Meanwhile, Brennan releases her second book to great success, but has to accommodate a nosy reporter, and Sweets' near-death experience leads him to make a drastic decision.
- DirectorDavid BoreanazStarsEmily DeschanelDavid BoreanazMichaela ConlinThe milestone 100th episode takes viewers back in time six years as Brennan and Booth recount the first case they worked on together. With Sweets finishing his book on their partnership, Brennan and Booth take this opportunity to set the record straight. A young and rebellious FBI Agent Booth seeks the help of an team of anthropological scientists and a street artist to find the evidence that will prove his high-profile suspect guilty. Although in unfamiliar territory, Dr. Brennan, her grad student Zack and Hodgins get right to work, impressing Booth with their knack for uncovering new leads and substantiating his theory about a well-connected district judge. While the case cements a foundation for a successful future partnership, it also reveals the convoluted romantic beginnings of the formidable duo - whose feelings for each other almost destroyed the team but still linger years later.
- DirectorAllan KroekerStarsEmily DeschanelDavid BoreanazMichaela ConlinThe team's latest case takes Brennan back to her alma mater, Burtonsville High School, where she and Booth investigate the discovery of an unidentified skull and upper torso. With Angela's help, they identify the victim as one of Brennan's classmates, and notice a possible connection to a second murder committed 15 years prior. Brennan and Booth go undercover as a married couple at her class reunion to interrogate a set of suspects, where even as an adult, Brennan is still predictably misunderstood and her only friend lies in a strangely dark and offbeat janitor. Meanwhile, Hodgins spills a lab secret.
- DirectorDwight H. LittleStarsEmily DeschanelDavid BoreanazMichaela ConlinWhen human remains are discovered in the belly of a shark, Brennan and Booth are brought in to identify the missing person. Evidence suggesting the victim had been the prey of several fish directs the team's investigation to The Aquarium of the Atlantic, where a guest lecturer and notorious self-help guru preaching the healing power of the ocean has gone missing. Meanwhile, both Brennan and Booth navigate their own relationship when a marine biologist shows interest in Booth.
- DirectorJeff WoolnoughStarsEmily DeschanelDavid BoreanazMichaela ConlinWhen the body of a rich adventure-seeker is found in a hotel laundry machine, Booth and Brennan are led to the last place he was seen: a Rock 'n Roll Fantasy Camp. While Brennan and Booth lead the investigation outside the lab, Hodgins, Angela and intern Arastoo use a fragment of prehistoric woolly mammoth tusk - found with the remains - and Angela's knowledge of the music industry to connect the evidence to potential suspects. Meanwhile, Cam looks for a doctor for her daughter Michelle.
- DirectorDwight H. LittleStarsEmily DeschanelDavid BoreanazMichaela ConlinThe trial of The Gravedigger hits close to home for members of the team, and everyone at the Jeffersonian must work overtime to uncover the forensic evidence to elicit a conviction.
- DirectorIan ToyntonStarsEmily DeschanelDavid BoreanazMichaela ConlinThe team works to uncover clues buried under a life's worth of possessions saved by a hoarder in order to solve the mystery of his death. Meanwhile, Angela's father has a specific purpose for his most recent visit, and Brennan and Booth are confronted with unique opportunities.
- DirectorIan ToyntonStarsEmily DeschanelDavid BoreanazMichaela ConlinFrom all over the world Brennan's former team reassembles to help Cam solve a difficult case of identifying an unknown baby's corpse, as her failure to do so may wreck her career. They soon realize this may not be just one case, but two.
- DirectorMilan CheylovStarsEmily DeschanelDavid BoreanazMichaela ConlinWhen the remains of a couple are discovered in a cave at National Park, the team must piece together the identity of the man and the woman as well as solve the crime. After interrogating two viable suspects, the team identifies the woman as a marketing executive who also served as her partner's AA sponsor, providing clues that lead them to expose the truth. Meanwhile, Booth's girlfriend and Afghanistan war correspondent, Hannah Burley, makes a surprise visit. After meeting Burley and sensing the couple's genuine happiness, Brennan re-evaluates her own relationship with Booth, and he tries to teach her that love is not always logical.
- DirectorDwight H. LittleStarsEmily DeschanelDavid BoreanazMichaela ConlinAfter a skull and decomposing hands are found in a dumpster, the team must not only solve the crime but also search for the rest of the victim's remains. Identified as Ray Raminsky, the victim turns out to be a bounty hunter in search of Charles Braverman, a man indicted for the murder of a co-worker. Meanwhile, Brennan is asked by Professor Bunsen Jude "The Science Dude" if he can shoot an episode of his children's show from The Jeffersonian Lab with Brennan as his special guest. Brennan initially turns him down, but is surprised when he makes her a deal she can't refuse, so she takes him on as a new "squintern." As the team pieces together the details of the crime, they discover that they are not alone in the hunt for Braverman and find themselves in a chase with an unexpected suspect.
- DirectorIan ToyntonStarsEmily DeschanelDavid BoreanazMichaela ConlinThe Jeffersonian team finds a body in a tree and Dr. Brennan discovers that the victim is practically a clone of herself.
- DirectorDavid BoreanazStarsEmily DeschanelDavid BoreanazMichaela ConlinThe city anxiously anticipates the arrival of Heather Taffet, more notoriously known as "The Gravedigger," for her final appeal after being sentenced to death for a kidnap-murder and a series of similar coldblooded crimes. But when a bullet targeted at The Gravedigger is fired from a distance and hits her, the Jeffersonian team is tasked to piece together the sniper's precise location as well as identify the suspect and his motives. With the help of probing investigator Caroline Julian, Booth and Brennan put together a list of likely suspects, but the evidence and the remarkable skill needed to pull off the crime leads the team to believe that the crime was an inside, professional job, leaving Brennan's father Max and even Booth as plausible suspects. Meanwhile, Sweets attempts to put on a brave face after being caught in the firestorm just moments following a chilly encounter with The Gravedigger.
- DirectorDwight H. LittleStarsEmily DeschanelDavid BoreanazMichaela ConlinA BMX rider's remains are discovered on the roof of a warehouse after a failed bike stunt. While Booth and Brennan interrogate the victim's fellow riders, Hodgins and newly mellowed "squint" Fisher identify the numerous fractures in the victim's skeletal structure, and Angela recreates the series of events that led to the fatal accident. Meanwhile, Sweets turns to Booth for advice about his relationship with Daisy, and Booth makes a decision about his relationship with Hannah.
- DirectorIan ToyntonStarsEmily DeschanelDavid BoreanazMichaela ConlinThe liquefied remains of a wedding planner are found in her home tanning bed on Valentine's Day, and Cam pressures her team to solve the case in time so she can celebrate the holiday with her boyfriend. While the "squints" works tirelessly in the lab, Booth and Brennan interrogate a slew of possible suspects until they unlock classified files in the victim's computer, which lead to their main suspect. Meanwhile, Booth and Brennan downplay the significance of Valentine's Day, and Hodgins tries to plan a romantic day for Angela, but "squint" Clark helps him realize that the most meaningful gifts come from the heart.
- DirectorDavid BoreanazStarsEmily DeschanelDavid BoreanazMichaela ConlinA severe blizzard causes a city-wide blackout, adding to the obstacles the team must overcome in order to solve a murder case that could be linked to a potential viral outbreak. But when Booth and Brennan find themselves trapped in an elevator during the power outage, Sweets is on hand for outside assistance, but does more than what's asked of him when he initiates a touchy conversation about Booth and Brennan's relationship. Meanwhile, Angela and Hodgins get worrisome news about the health of their unborn baby, and Hodgins and "squint" Wendell Bray get creative in the lab and put their scientific skills to use to identify the victim and the rare disease.
- DirectorEmile B. LevisettiStarsEmily DeschanelDavid BoreanazMichaela ConlinEight pairs of dismembered feet wash ashore after a recent flood on the U.S.-Canada border, but things don't add up when seven pairs of feet are identified as research corpses from a nearby university body farm. When Canadian forensic podiatrist Dr. Douglas Filmore takes the remains back to Canada, he and Brennan form an alliance to match the pairs of feet and identify the victim, and a rare and expensive pair of sneakers leads the team to the victim's murderer. Meanwhile, Cam gets in hot water when she makes college plans for her daughter behind her back.
- DirectorDaniel SackheimStarsEmily DeschanelDavid BoreanazMichaela ConlinSam Nozik's beetles-eaten corpse in a Florida glade is identified from his acrylic eye. He worked in a Miami museum, from which a treasure map to a Spanish galleon was stolen. Booth grudgingly allows his superstitious former foreign army tour acquaintance Walter Sherman (and his team of two) to use his 'tracing gift' to find and retrieve the treasure. They do, after consulting bishop Edward Galano on period navigation, and find the corpse, but meanwhile the diver herself has been murdered too. Booth meanwhile comes to terms with his grudge against Walter as 'insensitive' MP.
- DirectorDwight H. LittleStarsEmily DeschanelDavid BoreanazMichaela ConlinA mysterious young deaf girl is thought to have committed a recent murder after she's found on the streets, covered in blood and holding a knife. It's up to the Jeffersonian team to figure out who this girl is and determine if she's really the one to blame for the murder.
- DirectorAlex ChappleStarsEmily DeschanelDavid BoreanazMichaela ConlinThe search for Broadsky intensifies as he manages to kill one of the Squints. Angela and Hodgins name their baby. Booth struggles to protect those closest to him, which leads to an unexpected situation.
- DirectorIan ToyntonStarsEmily DeschanelDavid BoreanazMichaela ConlinA generally disliked member of Max Keenan's bowling team's corpse is found as a decomposing mess in the cones machinery when that renovated section is reopened, but he was knocked dead a week earlier. Booth, good at the game, and Bones go undercover as new team members to study players and staff, which yields lots of grim grudges. Wendell has a hard time standing in, with online assistance, for Angela, who finally gives birth.